*Rauer L & *De Tomassi A, Müller CL, Hülpüsch C, Traidl-Hoffmann C, *Reiger M & *Neumann AU. De-biasing microbiome sequencing data: bacterial morphology-based correction of extraction bias and correlates of chimera formation. Microbiome 2025. doi: 10.1186/s40168-024-01998-4
*Hülpüsch C & *Rauer L, Nussbaumer T, Schwierzeck V, Bhattacharyya M, Erhart V, Traidl-Hoffmann C, *Reiger M & *Neumann AU. Benchmarking MicrobIEM - a user-friendly tool for decontamination of microbiome sequencing data. BMC Biol 2023. doi: 10.1186/s12915-023-01737-5
Simon LM, Flocco C, Burkart F, Methner A, Henke D, Rauer L, Müller CL, Vogel J, Quaisser C, Overmann J, Simon S. Microbial fingerprints reveal interaction between museum objects, curators, and visitors. iScience 2023. doi: 10.1016/j.isci.2023.107578.
*De Tomassi A & *Reiter A, Reiger M, Rauer L, Rohayem R, Ck-Care Study Group, *Traidl-Hoffmann C & *Neumann AU & *Hülpüsch C. Combining 16S Sequencing and qPCR Quantification Reveals Staphylococcus aureus Driven Bacterial Overgrowth in the Skin of Severe Atopic Dermatitis Patients. Biomolecules 2023. doi: 10.3390/biom13071030.
Rauer L, Reiger M, Bhattacharyya M, Brunner PM, Krueger JG, Guttman-Yassky E, Traidl-Hoffmann C, Neumann AU. Skin microbiome and its association with host cofactors in determining atopic dermatitis severity. J Eur Acad Dermatol Venereol 2023. doi: 10.1111/jdv.18776.
Bhattacharyya M, Rauer L, Reiger M, Afghani J, Hülpüsch C, Traidl-Hoffmann, C, Neumann AU. AnnotIEM: novel tool for microbiome species-level annotation of 16S gene based microbial sequencing. bioRxiv 2024. doi: 10.1101/2024.10.31.621263
Crafton M, Cahini S, Lublin A, Rauer L, Spiegel O. Association between movement patterns, microbiome diversity, and potential pathogen presence in free-ranging feral pigeons foraging in dairy farms. bioRxiv 2023. doi: 10.1101/2023.10.11.561861
*equal contribution
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